University of Limerick Research Repository

Recent Submissions

  • PublicationOpen Access
    Finger pulse monitoring is a reliable and valid tool for measuring heart rate during exercise among adolescents in lab and school settings
    (Springer Nature, 2026-01-29) O'Keeffe, Brendan T.; Britton, Úna; Ng, Kwok
    Background A finger pulse monitor (FPM) offers multiple advantages for monitoring heart rate during exercise in comparison to chest worn monitors, including: enhanced testing efficiency; less invasive, particularly for vulnerable populations (e.g. children); and, reduced cost. The purpose of this study was to establish the test-retest reliability of an FPM device for monitoring heart rate during a 3-minute step test (3MST30) to estimate cardiorespiratory fitness in a lab and school setting, and to compare indices of reliability with a chest worn heart rate monitor. Methods Participants (N = 29; male = 16, female = 13; age: 15.8 ± 0.7) completed the 3MST30 on two occasions, in a lab setting (T1) and in a school setting (T2), one week apart. Participants wore a Braun® FPM and a Polar® H7 chest strap heart rate monitor. Heart rate in beats per minute (bpm) was recorded on both devices at 1-minute, 2-minutes, 3-minutes, and one minute following test completion. Equivalence testing was used to analyse the data for differences between the two devices by using the TOSTER R package. Results Absolute mean differences between devices and settings were clinically insignificant, with the smallest variance at the 1-minute post recording (FPM p = .012; chest strap = 0.041). There were no statistically significant differences in heart rate measurement between settings. Conclusions This study demonstrates that finger pulse monitoring is a reliable and valid tool for measuring heart rate during sub-maximal exercise in lab and school settings.
  • PublicationOpen Access
    Comparison of generalised additive models and neural networks in applications: A systematic review
    (Elsevier, 2026-05-01) Doohan, Jessica; Kook, Lucas; Burke, Kevin
    Neural networks have become a popular tool in predictive modelling, more commonly associated with machine learning and artificial intelligence than with statistics. Generalised Additive Models (GAMs) are flexible non-linear statistical models that retain interpretability. Both are state-of-the-art in their own right, with their respective advantages and disadvantages. This paper analyses how these two model classes have performed on real-world tabular data. Following PRISMA guidelines, we conducted a systematic review of papers that performed empirical comparisons of GAMs and neural networks. Eligible papers were identified, yielding 143 papers, with 430 datasets. Key attributes at both paper and dataset levels were extracted and reported. Beyond summarising comparisons, we analyse reported performance metrics using mixed-effects modelling to investigate potential characteristics that can explain and quantify observed differences, including application area, study year, sample size, number of predictors, and neural network complexity. Across datasets, no consistent evidence of superiority was found for either GAMs or neural networks when considering the most frequently reported metrics (RMSE, 𝑅2, and AUC). Neural networks tended to outperform in larger datasets and in those with more predictors, but this advantage narrowed over time. Conversely, GAMs remained competitive, particularly in smaller data settings, while retaining interpretability. Reporting of dataset characteristics and neural network complexity was incomplete in much of the literature, limiting transparency and reproducibility. This review highlights that GAMs and neural networks should be viewed as complementary approaches rather than competitors. For many tabular applications, the performance trade-off is modest, and interpretability may favour GAMs.
  • PublicationOpen Access
    Suicide prevention interventions and supports for the Autistic community: a scoping review protocol
    (BMJ, 2026-02-04) Russell, Amy; Cremen, Clodagh; Rainbow, Emma; Melia, Ruth
    Introduction Suicide is a leading cause of death among Autistic adults globally. Autistic people are up to six times more likely to die by suicide than people in the general population. Research highlights a lack of appropriate support for Autistic individuals experiencing suicidal thoughts and behaviours. Methods and analysis A scoping review will be conducted to map available literature on Suicide Prevention Interventions and Supports used with the Autistic community. This scoping review will use the methodological guidelines set out by the Joanna Briggs Institute Manual for Evidence Synthesis. The searches will be conducted in January 2025. The following electronic databases will be searched; PubMed, CINAHL Ultimate, PsycINFO and EMBASE, as well as the reference lists of included articles and grey literature (including conference abstracts, PhD theses, grey literature databases and preprints). The search strategy will be used to identify literature with an aim of preventing suicide in Autistic individuals. Only literature published in English will be included. Two reviewers will independently screen all literature based on predetermined inclusion and exclusion criteria. Data extraction will be piloted by two reviewers and continued by one reviewer. The extracted data will be checked for accuracy by a second reviewer. Any disagreements that arise between the reviewers will be resolved through discussion or with a third reviewer. A narrative summary of findings will be conducted. Results will be reported in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Review statement. Ethics and dissemination Ethics approval is not required for this study as it is protocol for a review of published literature and does not involve human participants or private data. Findings will be disseminated through professional networks, conference presentations and publication in a scientific journal.
  • PublicationOpen Access
    Meta-learner-basedframeworks for interpretableemailspam detection
    (frontiersin.org, 2025-10-21) Kshirsagar, Meghana; Rathi, Vedant; Ryan, Conor
    Introduction: With the increasing reliance on digital communication, email has become an essential tool for personal and professional correspondence. However, despite its numerous benefits, digital communication faces significant challenges, particularly the prevalence of spam emails. Effective spam email classification systems are crucial to mitigate these issues by automatically identifying and filtering out unwanted messages, enhancing the efficiency of email communication.
  • PublicationOpen Access
    Delftia spp as opportunistic pathogens: a narrative review
    (Elsevier, 2026-04-01) Ryan, Michael; Pembroke, J. Tony
    Non-fermenting Gram-negative bacteria pose a considerable challenge in medical settings and are increasingly implicated in infections in these settings. Many are opportunistic pathogens that primarily affect patients with other acute or chronic health conditions. Among them, Delftia species—particularly Delftia acidovorans - have traditionally been regarded as of limited clinical relevance. However, a comprehensive literature review has identified 175 reported cases of Delftia infections, with D. acidovorans accounting the majority cases (87.4 %). Bacteraemia was the most commonly associated condition, reported in 23 cases (13.1 %) with other infections such as pneumonia (9.8 %), sepsis (3.4 %) and peritonitis (2.9 %) also being prominent. The findings suggested that the antibiotics ceftazidime, ciprofloxacin and imipenem are usually effective in treating Delftia infections, but that gentamicin should be avoided. These findings suggest that while Delftia spp. may not be a widespread pathogen awareness and appropriate diagnostic recognition are required.